Workshops and courses

ELIXIR node event Linux command line

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Date: No date given

Duration: P1DT4H

Language of instruction: English

This course will help you with the very basics of Linux system. Topics covered are:Getting started in LinuxConcepts and basic commands in LinuxNavigating and getting help in LinuxWriting and running bash scripts

Keywords: hands-on, online, programming, software

Learning objectives:

  • Describe the basic principles of the AVITI and Illumina sequencing platforms and their role in NGS workflows
  • Execute a basic mapping workflow for NGS data and explain the purpose of each step
  • Identify common NGS file formats (FASTQ BAM) and demonstrate basic file handling operations
  • Navigate the Galaxy platform to run simple NGS analysis tasks in a reproducible environment
  • Perform quality control checks on raw NGS data using standard tools and interpret the results

Organizer: VIB (https://ror.org/03xrhmk39)

Event types:

  • Workshops and courses

Instructors: Bruna Piereck, Janick Mathys

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