Online Resource

Workflows with Snakemake

Learn to create reproducible and scalable bioinformatics workflows with Snakemake. Covers core Snakemake syntax, chaining rules, parallel execution, and Conda integration using RNA-seq analysis examples.

Keywords: DAG (directed acycli, HPC, Linux, Snakefile, bash, bioinformatics, data processing, job scheduling, python, reproducibility, workflow management, workflow reproducibi, workflow rules

Target audience: Undergraduate student, Postgraduate student, Postgraduate researcher, Researcher, Clinician, Research Software Engineer, Bioinformatician, Open Research Specialist, Industry, Public sector

Resource type: Online Resource

Authors: Booth, T., Medd, N., Dunn-Davies, H., Emelianova, K., & Turner, F.


Activity log