Training materials
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Authors: Bérénice Batut
and Contributors: Anthony Bretaudeau
and Related resources: Associated Training Datasets
13 materials found
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ELIXIR TeSS
e-learning
Phylogenetic analysis for bacterial comparative genomics
• BeginnerEvolutionary biology Genomics Microbiology Phylogeny Evolution microgalaxy work-in-progress -
ELIXIR TeSS
e-learning
Dataset construction for bacterial comparative genomics
• BeginnerGenomics Microbiology Genome Annotation microgalaxy work-in-progress -
ELIXIR TeSS
e-learning
Bacterial pangenomics
• BeginnerGenomics Microbiology Genome Annotation -
ELIXIR TeSS
e-learning
Identification of AMR genes in an assembled bacterial genome
• BeginnerGenomics Whole genome sequencing Public health and epidemiology Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod … -
ELIXIR TeSS
e-learning
Bacterial Genome Annotation
• BeginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod … -
ELIXIR TeSS
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
ELIXIR TeSS
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
ELIXIR TeSS
e-learning
Pre-processing of Single-Cell RNA Data
• BeginnerTranscriptomics Single Cell work-in-progress -
ELIXIR TeSS
e-learning
Clustering 3K PBMCs with Scanpy
• BeginnerTranscriptomics 10x Single Cell -
ELIXIR TeSS
e-learning
RNA Seq Counts to Viz in R
• BeginnerTranscriptomics Transcriptomics interactive-tools
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