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Scientific topic
- Workflows
- Biological models1
- Biological networks1
- Biological pathways1
- Cellular process pathways1
- Codon usage1
- DNA chips1
- DNA microarrays1
- Disease pathways1
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- Expression1
- Gene expression1
- Gene expression profiling1
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- RNA sequencing1
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- Small RNA sequencing1
- Small RNA-Seq1
- Small-Seq1
- Software integration1
- Tool integration1
- Tool interoperability1
- Transcription1
- Transcriptome profiling1
- WTSS1
- Whole transcriptome shotgun sequencing1
- miRNA-seq1
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Operation
- RNA-Seq analysis
- Alignment1
- Alignment construction1
- Alignment generation1
- Allele calling1
- Data handling1
- Exome variant detection1
- File handling1
- File processing1
- Genome variant detection1
- Germ line variant calling1
- Mutation detection1
- Processing1
- Read pre-processing1
- Report handling1
- Sequence read pre-processing1
- Somatic variant calling1
- Utility operation1
- Variant calling1
- Variant mapping1
- de novo mutation detection1
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Keyword
- commonwl1
- cwl1
- sciworkflows1
- workflows1
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Competency level
- Beginner1
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Licence
- Creative Commons Attribution 4.0 International1
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Target audience
- esearchers and research software engineers who would like to begin automating their analyses in workflows. 1
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Author
- Anne Luesink1
- Douglas Lowe1
- Gerard Capes1
- Michael R. Crusoe1
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Contributor
- Pedro L Fernandes1
- Sehrish Kanwal1
- Stian Soiland-Reyes1
- Toby Hodges1
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Resource type
- Carpentries style curriculum1
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Node
- Netherlands1
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Collection
- ELIXIR SIS-Containers - collection of training materials1
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