Training materials
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ELIXIR TeSS
e-learning
Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook -
ELIXIR TeSS
e-learning
Optimizing DNA Sequences for Biological Functions using a DNA LLM
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook work-in-progress -
ELIXIR TeSS
e-learning
Fine-tuning a LLM for DNA Sequence Classification
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook -
ELIXIR TeSS
e-learning
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook -
ELIXIR TeSS
e-learning
Generating Artificial Yeast DNA Sequences using a DNA LLM
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook -
ELIXIR TeSS
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• BeginnerMIGHTS Single Cell jupyter-notebook paper-replication -
ELIXIR TeSS
e-learning
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• Beginner10x MIGHTS Single Cell jupyter-notebook paper-replication -
ELIXIR TeSS
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• BeginnerMIGHTS Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
ELIXIR TeSS
e-learning
Introduction to sequencing with Python (part one)
• BeginnerSoftware engineering Foundations of Data Science jupyter-notebook -
ELIXIR TeSS
e-learning
Introduction to sequencing with Python (part two)
• BeginnerSoftware engineering Foundations of Data Science jupyter-notebook
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