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- Assembly16
- Sequence assembly16
- Exomes11
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- Personal genomics11
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- Viral genomics11
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- Comparative transcriptomics8
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- AMR1
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- Multiple drug resistance (MDR)1
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- Tool
- Galaxy54
- FastQC19
- MultiQC10
- QUAST9
- BEDTools8
- fastp8
- BUSCO7
- NanoPlot7
- SAMtools7
- Bandage6
- Falco5
- Flye5
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- Minimap24
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- kraken24
- Biopython3
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- DESeq23
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- MACS3
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- Clustal 1.8 (Clustal W, Clustal X)2
- FASTQE2
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- GECKO2
- GEMINI2
- Heinz2
- IsoformSwitchAnalyzeR2
- JBrowse 22
- Medaka2
- MetaPhlAn2
- PfamScan2
- Salmon2
- StringTie2
- Targetfinder.org2
- UCSC Genome Browser Utilities2
- Unicycler2
- gfastats2
- gffcompare2
- gffread2
- ggplot22
- miRDeep22
- pyGenomeTracks2
- pycoQC2
- rnaQUAST2
- scikit-learn2
- ABRicate1
- BLAST1
- Bracken1
- COMBAT-TB Workbench1
- ChIPpeakAnno1
- Clair31
- Clustal 2 (Clustal W, Clustal X)1
- Combine Metaphlan and HUMAnN1
- Diamond1
- DropletUtils1
- FastTree1
- FeatureCounts1
- Filtlong1
- GAEVAL1
- GOseq1
- Galactic Circos1
- GraPhlAn1
- InterProScan (EBI)1
- Jvarkit1
- MLST1
- Newick Utilities1
- OBITools1
- Polypolish1
- QualiMap1
- R1
- RED1
- Racon1
- RepeatMasker1
- RepeatModeler1
- SALSA1
- SCANPY1
- SPAdes1
- SeqCode1
- Smudgeplots1
- SortMeRNA1
- VelvetOptimiser1
- anndata1
- bx-python1
- clusterProfiler1
- eggNOG-mapper v21
- epiScanpy1
- ewastools1
- export2graphlan1
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- Content provider
- GTN55
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- Keyword
- Assembly14
- biodiversity9
- Transcriptomics7
- microgalaxy7
- assembly6
- plants6
- Microbiome5
- nanopore5
- Earth Data science4
- Epigenetics4
- Genome Annotation4
- Introduction to Galaxy Analyses4
- Sequence analysis3
- español3
- eukaryote3
- prokaryote3
- 10x2
- Imaging2
- QC2
- Single Cell2
- Statistics and machine learning2
- climate2
- cyoa2
- deutsch2
- italiano2
- jbrowse12
- metabarcoding2
- metagenomics2
- pacbio2
- pangeo2
- 16S1
- ChIP-seq1
- EBV dataset1
- EBV workflow1
- Earth observation1
- Ecology1
- Heatmap1
- Isolated object tracking1
- Multi-channel image1
- Nanopore data analysis1
- Pathogens detection1
- Phylogenetic tree1
- Synthetic Biology1
- VGP1
- Variant Analysis1
- Visualisation1
- alternative splicing1
- amr1
- animals1
- beer1
- bulk1
- citizen science1
- collections1
- community composition EBV class1
- covid191
- drosophila1
- eDNA1
- epigenetics1
- galaxy-intro1
- genetic composition EBV class1
- genome1
- gmod1
- illumina1
- interactive-tools1
- isoform switching1
- jupyter-notebook1
- metatranscriptomics1
- miRNA1
- network analysis1
- one-health1
- polishing1
- quality control1
- rna-seq1
- stress tolerance1
- taxonomic profiling1
- tuberculosis1
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- Competency level
- Beginner47
- Intermediate7
- Advanced1
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- Licence
- Creative Commons Attribution 4.0 International55
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- Target audience
- Students55
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- Author
- Cristóbal Gallardo11
- Bérénice Batut10
- Anthony Bretaudeau7
- Alexandre Cormier6
- Erwan Corre6
- Laura Leroi6
- Pavankumar Videm6
- Stéphanie Robin6
- Anne Fouilloux5
- Saskia Hiltemann5
- Simon Gladman5
- Anna Syme4
- Nicola Soranzo4
- Anton Nekrutenko3
- Beatriz Serrano-Solano3
- Delphine Lariviere3
- Helena Rasche3
- Lucille Delisle3
- Anika Erxleben2
- Bazante Sanders2
- Chao Zhang2
- Clemens Blank2
- Engy Nasr2
- Esteban Perez-Wohlfeil2
- Kaivan Kamali2
- Leily Rabbani2
- Maria Doyle2
- Paul Zierep2
- Peter van Heusden2
- Ryan Abernathey2
- Ahmed Hamid Awan1
- Alex Ostrovsky1
- Anne Pajon1
- Basile Goussard1
- Björn Grüning1
- Brandon Pickett1
- Cameron Hyde1
- Christophe Klopp1
- Coline Royaux1
- Daniel Blankenberg1
- Dave Clements1
- Eric Coissac1
- Fabian Recktenwald1
- Fidel Ramirez1
- Florian Heyl1
- Friederike Dündar1
- Frédéric Boyer1
- Giulio Formenti1
- Guillaume Gricourt1
- Hans-Rudolf Hotz1
- Ioana Popescu1
- Jean-Karim Hériché1
- Jean-Loup Faulon1
- Joachim Wolff1
- Joan Hérisson1
- Jonathan Kreplak1
- Katarzyna Kamieniecka1
- Kenza Bazi-Kabbaj1
- Krzysztof Poterlowicz1
- Linelle Abueg1
- Mallory Freeberg1
- Marcella Sozzoni1
- Mehmet Tekman1
- Mo Heydarian1
- Olivier Norvez1
- Polina Polunina1
- Pratik Jagtap1
- Sanne Abeln1
- Siyu Chen1
- Solenne Correard1
- Sophia Hampe1
- Subina Mehta1
- Teresa Müller1
- Thoba Lose1
- Thomas Duigou1
- Tom Brown1
- Vivek Bhardwaj1
- Yi Sun1
- Yvan Le Bras1
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- Contributor
- Cristóbal Gallardo
- Saskia Hiltemann274
- Björn Grüning227
- Helena Rasche224
- Bérénice Batut121
- Nicola Soranzo68
- Pavankumar Videm53
- Niall Beard44
- Anthony Bretaudeau42
- Martin Čech35
- Armin Dadras34
- Gildas Le Corguillé32
- Mehmet Tekman31
- Wendi Bacon31
- Teresa Müller30
- William Durand30
- Wolfgang Maier30
- Beatriz Serrano-Solano28
- Melanie Föll28
- Anup Kumar24
- Yvan Le Bras23
- Simon Bray21
- Maria Doyle19
- Leonid Kostrykin17
- Tristan Reynolds17
- Marie Josse16
- Subina Mehta16
- Deepti Varshney15
- Anne Fouilloux14
- Paul Zierep14
- Julia Jakiela13
- Lucille Delisle13
- Diana Chiang Jurado12
- Nate Coraor12
- Anton Nekrutenko11
- Delphine Lariviere10
- Marisa Loach10
- Pablo Moreno10
- Amirhossein Naghsh Nilchi9
- Daniela Schneider9
- Simon Gladman9
- Anna Syme8
- David López8
- Kaivan Kamali8
- Marius van den Beek8
- Matthias Bernt8
- Mélanie Petera8
- Stéphanie Robin8
- Paulo Cilas Morais Lyra Junior7
- Verena Moosmann7
- Alexandre Cormier6
- Clemens Blank6
- Florian Heyl6
- Hans-Rudolf Hotz6
- Mallory Freeberg6
- Morgan Howells6
- Pratik Jagtap6
- Alireza Khanteymoori5
- Bert Droesbeke5
- Christopher Barnett5
- Florian Christoph Sigloch5
- Peter van Heusden5
- Timothy J. Griffin5
- Clea Siguret4
- Fabio Cumbo4
- Khaled Jum'ah4
- Linelle Abueg4
- Riccardo Massei4
- Bazante Sanders3
- Coline Royaux3
- Dave Clements3
- Ekaterina Polkh3
- Engy Nasr3
- Enis Afgan3
- Joachim Wolff3
- Katarzyna Kamieniecka3
- Mateo Boudet3
- Miaomiao Zhou3
- Natalie Whitaker-Allen3
- Swathi Nataraj3
- Timon Schlegel3
- Alex Ostrovsky2
- Anika Erxleben2
- Carlos Chee Mendonça2
- Christine Oger2
- Christoph Stritt2
- CicoZhang2
- Donny Vrins2
- Esteban Perez-Wohlfeil2
- Fidel Ramirez2
- Florence Combes2
- Graeme Tyson2
- Igor Makunin2
- Jayadev Joshi2
- Jennifer Hillman-Jackson2
- Jonathan Kreplak2
- Jonathan Manning2
- Junhao Qiu2
- Kenza Bazi-Kabbaj2
- Laura Leroi2
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- Resource type
- e-learning34
- slides21
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- Related resource
- Associated Workflows
- Associated Training Datasets56
- Jupyter Notebook (with Solutions)2
- Jupyter Notebook (without Solutions)2
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- Collection
- ELIXIR Biodiversity Community1
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