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288 materials found
  • ELIXIR TeSS

    slides

    Feedforward neural networks (FNN) Deep Learning - Part 1

    • Beginner
    Statistics and probability Statistics and machine learning
  • ELIXIR TeSS

    slides

    Functionally Assembled Terrestrial Ecosystem Simulator (FATES)

    • Beginner
    Earth Data science climate ecology
  • ELIXIR TeSS

    slides

    The Pangeo ecosystem

    • Beginner
    Earth Data science climate
  • ELIXIR TeSS

    slides

    A Short Introduction to Galaxy

    • Beginner
    Introduction to Galaxy Analyses
  • ELIXIR TeSS

    e-learning

    Mapping

    • Beginner
    Sequence analysis Mapping Sequence analysis deutsch español italiano
  • ELIXIR TeSS

    e-learning

    Quality Control

    • Beginner
    Sequence analysis Sequence analysis deutsch español italiano
  • ELIXIR TeSS

    slides

    Mapping

    • Beginner
    Sequence analysis Sequence analysis
  • ELIXIR TeSS

    slides

    Quality Control

    • Beginner
    Sequence analysis Sequence analysis
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