Training materials
-
ELIXIR TeSS
e-learning
Identification of AMR genes in an assembled bacterial genome
• BeginnerGenomics Whole genome sequencing Public health and epidemiology Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod … -
ELIXIR TeSS
e-learning
Bacterial Genome Annotation
• BeginnerGenomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod … -
ELIXIR TeSS
e-learning
RNA-seq Alignment with STAR
• BeginnerTranscriptomics Transcriptomics -
ELIXIR TeSS
slides
Visualisations in Galaxy
• BeginnerVisualisation -
ELIXIR TeSS
slides
JBrowse
• BeginnerVisualisation -
ELIXIR TeSS
slides
Introduction to Genome Annotation
•• IntermediateGenomics Genome Annotation -
ELIXIR TeSS
slides
Introduction to Galaxy
• BeginnerIntroduction to Galaxy Analyses -
ELIXIR TeSS
e-learning
Long non-coding RNAs (lncRNAs) annotation with FEELnc
•• IntermediateGenomics Genome Annotation eukaryote -
ELIXIR TeSS
e-learning
Comparative gene analysis in unannotated genomes
• BeginnerGenomics Gene and protein families Sequence analysis Phylogeny Comparative genomics Genome Annotation annotation biodiversity cookbook eukaryote … -
ELIXIR TeSS
e-learning
Genome Assembly Quality Control
•• IntermediateSequence assembly Biodiversity Data quality management Assembly assembly biodiversity quality control