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- Scientific topic
- Sequence assembly
- Exomes38
- Genome annotation38
- Genomes38
- Genomics38
- Personal genomics38
- Synthetic genomics38
- Viral genomics38
- Whole genomes38
- Assembly27
- Biological sequences27
- Sequence analysis27
- Sequence databases27
- Algorithms24
- Computer programming24
- Data structures24
- Programming languages24
- Software development24
- Software engineering24
- Metagenomics23
- Shotgun metagenomics23
- Community analysis20
- Environmental microbiology20
- Microbial ecology20
- Microbiome20
- Molecular community analysis20
- Comparative transcriptomics18
- Transcriptome18
- Transcriptomics18
- Antimicrobial stewardship16
- Medical microbiology16
- Microbial genetics16
- Microbial physiology16
- Microbial surveillance16
- Microbiological surveillance16
- Microbiology16
- Molecular infection biology16
- Molecular microbiology16
- Biodiversity15
- Bayesian methods14
- Biostatistics14
- Bottom-up proteomics14
- Descriptive statistics14
- Discovery proteomics14
- Gaussian processes14
- Inferential statistics14
- MS-based targeted proteomics14
- MS-based untargeted proteomics14
- Markov processes14
- Metaproteomics14
- Multivariate statistics14
- Peptide identification14
- Probabilistic graphical model14
- Probability14
- Protein and peptide identification14
- Proteomics14
- Quantitative proteomics14
- Statistics14
- Statistics and probability14
- Targeted proteomics14
- Top-down proteomics14
- Taxonomy13
- DNA variation11
- Genetic variation11
- Genomic variation11
- Mutation11
- Polymorphism11
- Somatic mutations11
- Epigenomics10
- Epidemiology6
- Public health6
- Public health and epidemiology6
- DNA metabarcoding5
- De novo genome sequencing5
- Environmental metabarcoding5
- Gene and protein families5
- Gene families5
- Gene family5
- Gene system5
- Genes, gene family or system5
- Genome sequencing5
- Metabarcoding5
- Protein families5
- Protein sequence classification5
- RNA metabarcoding5
- WGS5
- Whole genome resequencing5
- Whole genome sequencing5
- eDNA metabarcoding5
- eRNA metabarcoding5
- Communicable disease4
- Computational chemistry4
- Computational ecology4
- Ecoinformatics4
- Ecological informatics4
- Ecology4
- Ecosystem science4
- Infectious disease4
- Metatranscriptomics4
- Proteogenomics4
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- Tool
- Galaxy27
- QUAST10
- Bandage8
- FastQC8
- BUSCO6
- Flye5
- NanoPlot5
- Minimap24
- MultiQC4
- fastp4
- BEDTools3
- BamTools3
- Bwa-mem23
- GenomeScope 2.03
- Merqury3
- SAMtools3
- Unicycler3
- gfastats3
- BCFtools2
- BWA2
- Cutadapt2
- JBrowse2
- Medaka2
- SPAdes2
- VelvetOptimiser2
- dRep2
- kraken22
- seqtk2
- snippy2
- ABRicate1
- BLAST1
- Bakta1
- Bowtie 21
- COMBAT-TB Workbench1
- CONCOCT1
- CheckM1
- Circos1
- Clair31
- Clustal 2 (Clustal W, Clustal X)1
- CoverM1
- Diamond1
- Falco1
- FastTree1
- Filtlong1
- FreeBayes1
- Galactic Circos1
- Jvarkit1
- KrakenTools1
- MEGAHIT1
- MLST1
- MaxBin1
- MetaBAT 21
- NGSUtils1
- Newick Utilities1
- OMArk1
- Polypolish1
- QualiMap1
- Racon1
- SALSA1
- SRA Software Toolkit1
- STAR1
- Smudgeplots1
- Vcflib1
- compute_sequence_length1
- dastool1
- gffread1
- ggplot21
- metaspades1
- pilon1
- purge_dups1
- shovill1
- taxonomy_krona_chart1
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- Content provider
- GTN27
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- Keyword
- Assembly19
- biodiversity12
- microgalaxy11
- assembly8
- prokaryote6
- Microbiome4
- jbrowse14
- Variant Analysis3
- metagenomics3
- nanopore3
- pacbio3
- plants3
- VGP2
- binning2
- eukaryote2
- gmod2
- Braker31
- Genome Annotation1
- Heatmap1
- Nanopore data analysis1
- Pathogens detection1
- Phylogenetic tree1
- QC1
- amr1
- animals1
- covid191
- cyoa1
- eukaryota1
- genome1
- illumina1
- one-health1
- polishing1
- quality control1
- tuberculosis1
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- Competency level
- Beginner18
- Intermediate9
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- Licence
- Creative Commons Attribution 4.0 International27
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- Target audience
- Students27
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- Author
- Delphine Lariviere8
- Simon Gladman8
- Anton Nekrutenko6
- Bérénice Batut5
- Anna Syme4
- Alex Ostrovsky3
- Anthony Bretaudeau3
- Cristóbal Gallardo3
- Paul Zierep3
- Alexandre Cormier2
- Bazante Sanders2
- Brandon Pickett2
- Erwan Corre2
- Helena Rasche2
- Laura Leroi2
- Linelle Abueg2
- Stéphanie Robin2
- Vini Salazar2
- Engy Nasr1
- Fabian Recktenwald1
- Fotis E. Psomopoulos1
- Giulio Formenti1
- Marcella Sozzoni1
- Nikos Pechlivanis1
- Peter van Heusden1
- Polina Polunina1
- Romane LIBOUBAN1
- Saskia Hiltemann1
- Solenne Correard1
- Thoba Lose1
- Tom Brown1
- Torsten Seemann1
- Wolfgang Maier1
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- Contributor
- Bérénice Batut
- Saskia Hiltemann32
- Helena Rasche27
- Björn Grüning26
- Cristóbal Gallardo18
- Anthony Bretaudeau13
- Niall Beard9
- Nicola Soranzo9
- Deepti Varshney8
- Delphine Lariviere7
- Anton Nekrutenko6
- Teresa Müller6
- Tristan Reynolds6
- William Durand6
- Anna Syme5
- Paul Zierep5
- Alexandre Cormier4
- Maria Doyle4
- Simon Gladman4
- Wolfgang Maier4
- Gildas Le Corguillé3
- Linelle Abueg3
- Natalie Whitaker-Allen3
- Solenne Correard3
- Bazante Sanders2
- Erwan Corre2
- Laura Leroi2
- Miaomiao Zhou2
- Mélanie Petera2
- Nate Coraor2
- Peter van Heusden2
- Saim Momin2
- Stéphanie Robin2
- Alex Ostrovsky1
- Anne Fouilloux1
- Armin Dadras1
- Engy Nasr1
- Enis Afgan1
- Giuseppe Defazio1
- Hans-Rudolf Hotz1
- Jennifer Hillman-Jackson1
- Marius van den Beek1
- Matúš Kalaš1
- Nikos Pechlivanis1
- Polina Polunina1
- Romane LIBOUBAN1
- Tom Brown1
- Verena Moosmann1
- Vijay1
- Yvan Le Bras1
- pimarin1
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- Resource type
- e-learning24
- slides3
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- Related resource
- Associated Workflows25
- Associated Training Datasets24
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