Training materials
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ELIXIR TeSS
e-learning
16S Microbial Analysis with mothur (short)
• BeginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy -
ELIXIR TeSS
e-learning
Metatranscriptomics analysis using microbiome RNA-seq data
• BeginnerMetagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy -
ELIXIR TeSS
e-learning
Antibiotic resistance detection
• BeginnerMetagenomics Microbial ecology Metagenomic sequencing Public health and epidemiology Microbiology Infectious disease Sequence analysis Antimicrobial resistance Microbiome amr … -
ELIXIR TeSS
e-learning
Workflow Run RO-Crate Introduction
• BeginnerFAIR Data, Workflows, and Research ro-crate -
ELIXIR TeSS
e-learning
RNA-seq Alignment with STAR
• BeginnerTranscriptomics Transcriptomics -
ELIXIR TeSS
e-learning
Clean and manage Sanger sequences from raw files to aligned consensus
• BeginnerSequence analysis Sequence analysis -
ELIXIR TeSS
e-learning
Screening assembled genomes for contamination using NCBI FCS
• BeginnerSequence analysis Sequence analysis -
ELIXIR TeSS
e-learning
Scanpy Parameter Iterator
• BeginnerSingle Cell single-cell -
ELIXIR TeSS
e-learning
Versioning your code and data with git
• BeginnerSoftware engineering Foundations of Data Science -
ELIXIR TeSS
e-learning
CUT&RUN data analysis
• BeginnerEpigenomics Epigenetics