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- Data management113
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- Galaxy285
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- HISAT25
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- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- Salmon5
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- anndata5
- kraken25
- BUSCO4
- Bowtie 24
- Chipster4
- DESeq24
- Diamond4
- KrakenTools4
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- Ontology Lookup Service4
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- annotatemyids4
- bx-python4
- mothur4
- scikit-image4
- seqtk4
- snpEff4
- BCFtools3
- Bracken3
- Bwa-mem23
- Clustal 1.8 (Clustal W, Clustal X)3
- DropletUtils3
- European Nucleotide Archive (ENA)3
- GOseq3
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- GraPhlAn3
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- gffcompare3
- humann3
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- xcms3
- Bakta2
- Bowtie2
- BridgeDbR2
- Cardinal2
- CellProfiler2
- ChIPpeakAnno2
- Combine Metaphlan and HUMAnN2
- FASTQE2
- FastTree2
- GECKO2
- GOEnrichment2
- GenomeScope 2.02
- HUMAnN22
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- InterMineR2
- InterProScan (EBI)2
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- Standard database or policy
- FAIRsharing3
- Common Workflow Language2
- European Nucleotide Archive2
- Minimum Information about Plant Phenotyping Experiment2
- OBO Foundry2
- Ontology Lookup Service2
- PRoteomics IDEntifications database2
- RDA DMP Common Standard for Machine-Actionable Data Management Plans2
- Wheat Data Interoperability Guidelines 1
- Bioschemas1
- Cellosaurus1
- Chemical Entities of Biological Interest1
- Crop Ontology1
- Datanator1
- Ensembl1
- FAIR sharing1
- IUPAC International Chemical Identifier1
- Identifiers.org Registry1
- Investigation Study Assay JSON1
- Investigation Study Assay Tabular1
- MDL molfile Format1
- ModelArchive1
- Multi-Crop Passport Descriptors1
- Plant Phenotype Experiment Ontology1
- Research Object Crate1
- Resource Identification Portal 1
- STRING: functional protein association networks1
- Schema.org1
- Search Tool for Interactions of Chemicals1
- Simplified Molecular Input Line Entry Specification Format1
- The European Genome-phenome Archive1
- The Human Metabolome Database1
- The Observational Medical Outcomes Partnership Common Data Model1
- UniProt Knowledgebase1
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- Wikidata1
- Worldwide Protein Data Bank1
- Zenodo 1
- data.eNanoMapper.net1
- eNanoMapper Ontology1
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- Content provider
- GTN565
- SIB Swiss Institute of Bioinformatics80
- DTLS - Dutch Techcentre For Life Sciences32
- Bioinformatics and Biomathematics Training Hub30
- PaN Training30
- VIB Training & Conferences20
- ELIXIR13
- CINECA PROJECT11
- ELIXIR Estonia10
- CSC - IT Center for Science9
- EMBL-ABR9
- IFB French Institute of Bioinformatics9
- NBIS9
- Department of Bioinformatics - BiGCaT, Maastricht University6
- ELXIR-UK DaSH6
- Barcelona Supercomputing Center (BSC)5
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- ELIXIR-SI eLearning Platform (EeLP)5
- Glittr.org5
- Danish National Health Data Science Sandbox4
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- NanoCommons4
- University of Cambridge Bioinformatics Training4
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- University of Edinburgh3
- de.NBI3
- BioData.pt2
- InterMine2
- Pattern Institute2
- PerMedCoE2
- Bioconductor1
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- Keyword
- Galaxy Server administration66
- Development in Galaxy45
- FAIR39
- Single Cell39
- biodiversity37
- microgalaxy33
- Foundations of Data Science32
- Ecology30
- Statistics and machine learning30
- Transcriptomics30
- jupyter-notebook29
- training29
- Microbiome28
- FAIR Data, Workflows, and Research26
- data management26
- Contributing to the Galaxy Training Material25
- Proteomics24
- FAIR principles23
- FAIR data22
- Genome Annotation21
- Metadata21
- ansible20
- Assembly19
- Using Galaxy and Managing your Data19
- Data management18
- Python18
- git-gat18
- Earth Data science17
- Open Science17
- fair17
- interactive-tools17
- Data analysis16
- HemaFAIR16
- Introduction to Galaxy Analyses16
- Research Data Management16
- Teaching and Hosting Galaxy training16
- data stewardship16
- earth-system15
- work-in-progress14
- Data management planning13
- Bioinformatics13
- Data sharing13
- Epigenetics13
- FAIR Data13
- bioinformatics13
- metagenomics13
- prokaryote13
- DMP12
- Data reuse12
- Roslin Institute12
- Variant Analysis12
- paper-replication12
- CONVERGE11
- European research projects11
- MIGHTS11
- Ontologies11
- Sequence analysis11
- ELIXIR-CONVERGE10
- Standards10
- genes and genomes10
- metadata10
- ocean10
- plants10
- research data management10
- transcriptomics10
- Metabolomics9
- Workflows9
- cyoa9
- label-free9
- Data management plan8
- Evolution8
- Galaxy Community Building8
- Imaging8
- Programming8
- assembly8
- data visualisation8
- español8
- gmod8
- medicine and health8
- nanopore8
- reproducibility8
- 10x7
- Babraham Institute7
- Clinical data7
- DDA7
- DMP tools7
- Data Management7
- Data Management Plan7
- EBV dataset7
- EBV workflow7
- Interoperability7
- R7
- Rare Diseases & Research7
- Reproducibility7
- SARS-CoV-27
- dmp7
- ecology7
- elixir7
- genomics7
- jbrowse17
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- Competency level
- Beginner
- Not specified10017
- Intermediate327
- Advanced53
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- Licence
- Creative Commons Attribution 4.0 International717
- License Not Specified124
- Creative Commons Attribution Share Alike 4.0 International49
- Creative Commons Attribution Non Commercial Share Alike 4.0 International19
- Other (Not Open)17
- MIT License13
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International10
- Other (Non-Commercial)8
- Creative Commons Zero v1.0 Universal6
- Other (Attribution)6
- Apache License 2.05
- Creative Commons Attribution 1.0 Generic5
- Creative Commons Attribution Non Commercial 4.0 International5
- Creative Commons Attribution No Derivatives 4.0 International3
- Other (Open)3
- GNU General Public License v3.0 only2
- Creative Commons Attribution Non Commercial 2.0 Generic1
- GNU General Public License v2.0 only1
- Open Data Commons Attribution License v1.01
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- Target audience
- Students436
- Galaxy Administrators111
- Researchers53
- Instructors49
- Biologists34
- PhD candidate26
- Life Science Researchers23
- Data stewards21
- PhD candidates20
- bioinformaticians18
- Bioinformaticians17
- PhD students17
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- Data Scientist16
- Data managers16
- PhD Students14
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- Data Scientists11
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- Beginner9
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- Bench biologists7
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- biologists7
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- Biomedical researchers6
- PaN Community6
- Scientific community6
- Trainers6
- modelers6
- Chemists5
- ExPaNDS and PaNOSC project members5
- Patient Advocates 5
- research data engineer5
- researchers5
- rare disease patients representatives4
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists with little or no prior computational experience4
- Laboratory technicians4
- PI4
- PaN users4
- Post Docs4
- Training Designers4
- Training instructors4
- Veterinarians4
- data managers4
- Academia/ Research Institution3
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- Bioinformatician, Bioanalysts3
- Biologists, Genomicists, Computer Scientists3
- Curators3
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- Graduate students3
- Healthcare3
- Industry3
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- Policy makers3
- Undergraduate students3
- beginner bioinformaticians3
- biocurators3
- data curator3
- data steward / data manager3
- engineers3
- instrument scientist3
- life scientists3
- project manager3
- software developers, bioinformaticians3
- Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
- Bioinformaticians, Biologists with little or no prior computational experience.2
- Clinical Scientists2
- Data Manager2
- Database users2
- Graduate Students2
- Life Scientists2
- Ontologists2
- PhD2
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members2
- Post-Doctoral Fellows2
- Postdocs and Staff members2
- Principal Investigators (PIs)2
- Research scientists2
- Staff2
- Technicians2
- computational scientists2
- database managers2
- facility staff2
- plant researchers2
- policy officer2
- post-docs2
- postdocs2
- scientists2
- All postgraduates1
- Any students, postdocs or RAs who have an interest in bioinformatics and who intend to carry out statistical analysis of their experimental data using R. This two day course is planned to be a very gentle introduction to the very basic concepts of R.1
- Any students, postdocs or RAs who have an interest in bioinformatics and who intend to conduct their own analyses on a Linux platform. Those intending to register for the upcoming Introduction to HPC course are very strongly encouraged to attend this short (two morning) course and it should be seen as a prerequisite for later courses to be offered on ChIP-Seq analysis and command line/Galaxy implementations of NGS workflows.1
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- Author
- Helena Rasche94
- Bérénice Batut93
- Saskia Hiltemann53
- SIB Swiss Institute of Bioinformatics50
- Björn Grüning42
- Simon Gladman34
- Yvan Le Bras27
- Nate Coraor25
- Nicola Soranzo24
- Anton Nekrutenko23
- John Chilton23
- Subina Mehta20
- Marie Josse19
- Wendi Bacon18
- Katarzyna Kamieniecka17
- Krzysztof Poterlowicz17
- Anne Fouilloux16
- Anthony Bretaudeau16
- Fotis E. Psomopoulos15
- Mehmet Tekman15
- Paul Zierep15
- Bazante Sanders14
- Mijke Jetten14
- Julia Jakiela13
- Katherine Do13
- Maria Doyle13
- Monique Zahn13
- The Carpentries13
- Anup Kumar12
- Pavankumar Videm11
- Cristóbal Gallardo10
- Dave Clements10
- Donny Vrins10
- James Johnson10
- Khaled Jum'ah10
- Martin Čech10
- Celia van Gelder9
- Delphine Lariviere9
- Egon Willighagen9
- Marius van den Beek9
- Wandrille Duchemin9
- Anika Erxleben8
- Daniel Blankenberg8
- Geert van Geest8
- Helen Brown8
- Kaivan Kamali8
- Lucille Delisle8
- Personalized Health Informatics Group8
- Robert Andrews8
- Sergio Martínez Cuesta8
- Alexander Botzki7
- Branka Franicevic7
- Diana Pilvar7
- Joachim Wolff7
- Laura Cooper7
- Patricia Palagi7
- Pratik Jagtap7
- Wolfgang Maier7
- Allegra Via6
- Andrew Mason6
- Anna Syme6
- Anne Pajon6
- Clemens Blank6
- Coline Royaux6
- ELIXIR Goblet Train the Trainers6
- Melanie Föll6
- Michael Charleston6
- Morgan Howells6
- Philippe Le Mercier6
- Philippe Rocca-Serra6
- Polina Polunina6
- Priit Adler6
- Sara Morsy6
- Valentin Loux6
- Xenia Perez Sitja6
- Alex Ostrovsky5
- Alexandre Cormier5
- Daniela Schneider5
- Dechen Bhuming5
- Deepak Tanwar5
- Diana Chiang Jurado5
- Donat Agosti5
- Eija Korpelainen5
- Emma Leith5
- Erwan Corre5
- Gildas Le Corguillé5
- Heleri Inno5
- Hélène Chiapello5
- Julia Giora5
- Kellie Snow5
- Korneel Hens5
- Laura Leroi5
- Marie-Claude Blatter5
- Marisa Loach5
- Mira Kuntz5
- Munazah Andrabi5
- Nick Juty5
- Plazi Verein5
- Saskia Lawson-Tovey5
- Solenne Correard5
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- Contributor
- Saskia Hiltemann476
- Helena Rasche413
- Björn Grüning346
- Bérénice Batut200
- Nicola Soranzo157
- Martin Čech118
- Cristóbal Gallardo90
- Niall Beard83
- Anthony Bretaudeau76
- Nate Coraor67
- Wendi Bacon66
- Armin Dadras58
- Pavankumar Videm56
- Gildas Le Corguillé55
- William Durand54
- Simon Gladman51
- Marius van den Beek46
- Mehmet Tekman44
- Yvan Le Bras43
- Lucille Delisle42
- Teresa Müller42
- Marie Josse37
- Beatriz Serrano-Solano29
- Wolfgang Maier26
- Maria Doyle22
- Anne Fouilloux21
- Anup Kumar21
- Julia Jakiela20
- Tristan Reynolds19
- Khaled Jum'ah17
- Melanie Föll16
- Petros Kountouris16
- Pratik Jagtap16
- Subina Mehta16
- Marisa Loach15
- Paul Zierep15
- Simon Bray15
- Deepti Varshney14
- Bazante Sanders13
- Daniela Schneider13
- David López13
- Donny Vrins13
- Mira Kuntz13
- Timothy J. Griffin13
- Anton Nekrutenko12
- Delphine Lariviere12
- Matthias Bernt12
- Pablo Moreno12
- Gianmauro Cuccuru11
- Katarzyna Kamieniecka11
- Mélanie Petera11
- Peter van Heusden11
- John Chilton9
- Paul De Geest9
- Elin Kronander8
- Hans-Rudolf Hotz8
- Kaivan Kamali8
- Leonid Kostrykin8
- Tomas Klingström8
- Verena Moosmann8
- Wolmar Nyberg Åkerström8
- Amirhossein Naghsh Nilchi7
- Anna Syme7
- Diana Chiang Jurado7
- Florian Heyl7
- Katherine Do7
- Markus Englund7
- Mattias Strömberg7
- Melissa Burke7
- Morgan Howells7
- Niclas Jareborg7
- Stephan Nylinder7
- Yvonne Kallberg7
- Alexandre Cormier6
- Dave Clements6
- Ekaterina Polkh6
- Erik Hedman6
- Mallory Freeberg6
- Sabine Österle6
- Solenne Correard6
- Alex Ostrovsky5
- Alireza Khanteymoori5
- Bert Droesbeke5
- Catherine Bromhead5
- Enis Afgan5
- John Davis5
- Stéphanie Robin5
- Vassilios Ioannidis5
- Vicky Schneider5
- Andrea Bagnacani4
- Clea Siguret4
- Coline Royaux4
- Daniel Sobral4
- Dave B.4
- Eli Chadwick4
- Fotis E. Psomopoulos4
- Phil Reed4
- Pinar Alper4
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- tutorial4
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- FREE online course3
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- youtube video3
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- Installation instructions2
- Jupyter notebook2
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- online course2
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- scripts2
- slideck/ presentation2
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- Related resource
- Associated Training Datasets260
- Associated Workflows236
- Jupyter Notebook (with Solutions)29
- Jupyter Notebook (without Solutions)29
- The Carpentries7
- Slides4
- Quarto/RMarkdown Notebook3
- DMPonline2
- Recoding2
- Workshop recording2
- ALBA's youtube channel1
- CanCOGeN1
- Chipster1
- DMP Template for facility users1
- DMPs for Photon and Neutron RIs1
- Data Stewardship Wizard1
- Data Visualisation (theory) 1
- DisProt1
- FAIR for busy biologists1
- FAIR in (biological) practice1
- FAIRplus FAIRification wizard1
- GEEM1
- Galaxy project guided tours1
- GitHub1
- ICAT documentation1
- Light for cultural heritage1
- Light for food1
- Light for health1
- Light for health (Hepatitis C)1
- Light for the environment1
- Materials on OSF1
- MobiDB1
- Next generation biobanking ontology (NGBO)1
- OpenCloning1
- OpenRefine1
- Public Health Alliance for Genomic Epidemiology1
- R basics1
- RDMO project website1
- RDMkit1
- REPET image Docker1
- Ready For BioData Management?1
- SciCat GitHub1
- SciCat documentation1
- Slides for Introduction to statistics with R 1
- Video Walkthrough of the Poster1
- Video recording1
- Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle1
- Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle1
- compareMS21
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- recorded guidance on how to install a SciNote account1
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- recorded presentation on integration of ELNs in nanosciences1
- seq-seq-pan1
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- Collection
- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
- PINK project10
- ELIXIR Biodiversity Community5
- Elements of Data Management5
- RDMbites: Data management essentials5
- SARS-CoV-2 : Studying a new virus5
- ELIXIR SIS-Containers - collection of training materials4
- ELIXIR Toxicology Community3
- ELIXIR Federated Human Data Community2
- ELIXIR Systems Biology Community: training events and materials2
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
- Impact of research infrastructures1
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