Training materials
-
ELIXIR TeSS
Perl One-liner - Genotoul-bioinfo
•• Intermediatehttp://edamontology.org/topic_3316 -
ELIXIR TeSS
Course materials
Applied Metagenomics - AM22 (October 11-14, 2022)
•• IntermediateMetagenomics Metagenomic sequencing Metagenomics metagenomics Genomic data Genomic sequences genomics Taxonomic concepts Genome assembly Genome Assembly … -
ELIXIR TeSS
Course materials
Applied Metagenomics - AM21 (November 1-5, 2021)
•• IntermediateMetagenomics Metagenomic sequencing Metagenomics metagenomics Genomic data Genomic sequences genomics Taxonomic concepts Genome assembly Genome Assembly … -
ELIXIR TeSS
e-learning
Fine-tuning a LLM for DNA Sequence Classification
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook -
ELIXIR TeSS
e-learning
Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook -
ELIXIR TeSS
e-learning
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook -
ELIXIR TeSS
e-learning
Generating Artificial Yeast DNA Sequences using a DNA LLM
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook -
ELIXIR TeSS
e-learning
Optimizing DNA Sequences for Biological Functions using a DNA LLM
•• IntermediateStatistics and probability Large Language Model Statistics and machine learning ai-ml elixir jupyter-notebook work-in-progress -
ELIXIR TeSS
scripts, examples
Using OpenCloning to automate the planning and documentation of cloning and genome engineering via python scripting
•• IntermediateSynthetic biology Metabolic engineering Molecular biology Genetic engineering Synthetic biology Genetic Engineering Molecular biology -
ELIXIR TeSS
e-learning
Using BioImage.IO models for image analysis in Galaxy
•• IntermediateImaging Deep learning Image annotation Image segmentation Imaging