Training materials
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ELIXIR TeSS
e-learning
Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools
•• IntermediateImaging Conversion Imaging Multi-channel image Object feature extraction ROI selection -
ELIXIR TeSS
e-learning
Training Custom YOLO Models for Segmentation of Bioimages
•• IntermediateImaging Deep learning Image annotation Image segmentation Imaging -
ELIXIR TeSS
hands-on tutorial, E-Learning
RNA-seq | From Counts 2 Biological Insights
•• IntermediateMolecular genetics Gene expression Transcriptomics RNA-Seq RNA-Seq bulk mouse Quality Control PCA Functional enrichment … -
ELIXIR TeSS
e-learning
Comparison of two annotation tools - Helixer and Braker3
•• IntermediateGenomics Sequence assembly Braker3 Genome Annotation Helixer biodiversity eukaryota jbrowse1 -
ELIXIR TeSS
lessons
Dashboards as showcases for FAIR collections
•• IntermediateFAIR data Biodiversity Bioinformatics Data visualisation Data curation and archival Database management FAIR Data Dashboard Data Management Online Repository -
ELIXIR TeSS
Nanopublication Tutorial at ESWC 2025
•• IntermediateFAIR data Computer science Data management nanopublication Semantic Web decentralization -
ELIXIR TeSS
e-learning
Annotate, prepare tests and publish Galaxy workflows in workflow registries
•• IntermediateFAIR Using Galaxy and Managing your Data workflows -
ELIXIR TeSS
e-learning
Molecular formula assignment and mass recalibration with MFAssignR package
•• IntermediateMetabolomics Metabolomics exposomics gc-ms lc-ms metabolomics -
ELIXIR TeSS
e-learning
Voronoi segmentation
•• IntermediateImaging Image segmentation Imaging Multi-channel image Object counting Overlay Tessellation -
ELIXIR TeSS
Course materials
Programming Formalisms
•• Intermediatesoftware development best practices