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- Genome variant detection4
- Germ line variant calling4
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- Mutation detection4
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- de novo mutation detection4
- Data formatting2
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- Galaxy373
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- scikit-learn16
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- DeepTools13
- BLAST12
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- QUAST12
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- RStudio11
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- GEMINI10
- scikit-image10
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- FreeBayes9
- NanoPlot9
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- FASTX-Toolkit8
- BCFtools7
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- Biopython7
- HISAT27
- Ontology Lookup Service7
- Trim Galore7
- msConvert7
- seqtk7
- European Nucleotide Archive (ENA)6
- Flye6
- MAFFT6
- MaxQuant6
- Minimap26
- Open Babel6
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- Workflow4Metabolomics6
- gffread6
- BridgeDb5
- COPASI5
- DESeq25
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- MetaPhlAn5
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- SRA Software Toolkit5
- Salmon5
- StringTie5
- anndata5
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- compute_sequence_length5
- gffcompare5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- Chipster4
- Diamond4
- GOseq4
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- MACS4
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- Merqury4
- Newick Utilities4
- QualiMap4
- The Protein Data Bank (PDB)4
- UniProt4
- bx-python4
- mothur4
- snpEff4
- Apollo3
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- Bracken3
- BridgeDbR3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DISEASES3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterMine3
- InterMineR3
- InterProScan (EBI)3
- MGnify (was EBI Metagenomics)3
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- FAIRsharing6
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- DisProt2
- Minimum Information about Plant Phenotyping Experiment2
- OBO Foundry2
- Ontology Lookup Service2
- PRoteomics IDEntifications database2
- STRING: functional protein association networks2
- Search Tool for Interactions of Chemicals2
- The European Genome-phenome Archive2
- The Observational Medical Outcomes Partnership Common Data Model2
- eNanoMapper Ontology2
- Wheat Data Interoperability Guidelines 1
- BRENDA1
- BcForms Grammar1
- Bioschemas1
- BpForms Grammar1
- BridgeDb1
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- FAIR sharing1
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- IUPAC International Chemical Identifier1
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- Integrated resource of protein families, domains and functional sites1
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- Investigation Study Assay Tabular1
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- ObjTables1
- Observational Medical Outcomes Partnership Standard Vocabulary1
- PRINTS1
- Plant Phenotype Experiment Ontology1
- Research Object Crate1
- Resource Identification Portal 1
- SUPERFAMILY1
- Schema.org1
- Simplified Molecular Input Line Entry Specification Format1
- Stress Knowledge Map1
- Structural Classification Of Proteins1
- The FAIR Principles1
- The Human Metabolome Database1
- UniProt Knowledgebase1
- Wheat Trait Ontology1
- Wikidata1
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- Bioinformatics and Biomathematics Training Hub62
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- Khan Academy Statistics32
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- Canadian Bioinformatics Workshops27
- Coding for Reproducible Research (CfRR)19
- Coursera19
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- CINECA PROJECT17
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- NBIS11
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- Bioschemas9
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- Department of Bioinformatics - BiGCaT, Maastricht University8
- Genome 3D8
- InterMine8
- Centre for Genomic Regulation (CRG)7
- BioData.pt6
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- ELIXIR-SI eLearning Platform (EeLP)6
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- Danish National Health Data Science Sandbox5
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- LIPID MAPS5
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- QUADIS172
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- Hochschule140
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- RNA-seq128
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- FAIR data115
- Vorlage107
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- biodiversity106
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- blended learning93
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- CHE86
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- jupyter-notebook85
- OER83
- Reproducibility82
- digital gestützte Lehre82
- Machine learning81
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- data management80
- Educación física77
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- Open Science69
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- HBOVPK65
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- gaming65
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- Jukka Rajala54
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- training52
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- HAN49
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- luomu47
- Digitalisierung46
- Genome assembly46
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- Development in Galaxy45
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- Bildung43
- Galaxy42
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- programming42
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- workshop39
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- Genome annotation37
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- Creative Commons Attribution Non Commercial Share Alike 4.0 International714
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- MIT License161
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- GNU General Public License v3.0 only53
- Other (Not Open)24
- Apache License 2.021
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- Other (Attribution)6
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- CeCILL Free Software License Agreement v2.13
- Artistic License 2.02
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- GNU General Public License v2.0 only2
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- Target audience
- Students588
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- PhD students234
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- Graduate Students82
- Life Science Researchers79
- PaN Community63
- Biologists55
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- Bioinformaticians34
- Scientific community30
- PhD candidate27
- Intermediate26
- beginner bioinformaticians26
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- PhD candidates23
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- scientists22
- PhD Students21
- beamtime users, researchers, PhD students21
- Bench biologists20
- life scientists20
- Academia/ Research Institution17
- Data Scientists17
- Industry17
- Non-Profit Organisation17
- researchers17
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- Data Scientist16
- Data managers16
- Trainers16
- ExPaNDS and PaNOSC project members15
- Healthcare15
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- health professionals13
- Master students13
- Research Scientists13
- Researcher13
- Researcher in life sciences13
- Biomedical Researchers12
- Computational biologists12
- Post Docs12
- biologists12
- data managers12
- healthcare professionals12
- software developers, bioinformaticians12
- biocurators11
- Life Scientists10
- Life scientists10
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- general public8
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- rare disease patients representatives7
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- computational scientists6
- engineers6
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- postdocs6
- project manager6
- General Interest5
- Professors5
- archaeologists5
- crystallography5
- genomics researchers5
- material scientists5
- neutron community5
- postgrad5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists with little or no prior computational experience4
- Curators4
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- Helena Rasche128
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- Martin Morgan97
- Saskia Hiltemann66
- The Carpentries Incubator64
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- Simon Gladman37
- The Gulbenkian Training Programme in Bioinformatics36
- bioinformatics.ca35
- bebatut32
- bgruening32
- Donat Agosti29
- Julia Giora29
- Plazi Verein29
- Yvan Le Bras29
- Anthony Bretaudeau28
- Anton Nekrutenko28
- Nate Coraor27
- Subina Mehta27
- John Chilton25
- Nicola Soranzo25
- Teaching materials at the Harvard Chan Bioinformatics Core25
- The Carpentries25
- Saskia Lawson-Tovey24
- Egon Willighagen22
- NBIS - National Bioinformatics Infrastructure Sweden22
- Anne Fouilloux21
- Fotis E. Psomopoulos21
- Michelle Brazas21
- posit-conf-202321
- Coding for Reproducible Research Initiative19
- Data Carpentry19
- Marie Josse19
- Wendi Bacon19
- posit::conf(2024)19
- Bazante Sanders18
- Katarzyna Kamieniecka18
- Krzysztof Poterlowicz18
- Laura Cooper18
- Terri Attwood18
- UC Davis Bioinformatics Core Training Page18
- Wandrille Duchemin18
- András Aszódi17
- Mehmet Tekman17
- Sergio Martínez Cuesta17
- shiltemann17
- Paul Zierep16
- Cristóbal Gallardo15
- Laserlab Europe15
- Samaha, Georgina15
- Alexander Botzki14
- Julia Jakiela14
- Maria Doyle14
- Mijke Jetten14
- Monique Zahn14
- Pratik Jagtap14
- nekrut14
- CRUK CI Bioinformatics Core13
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- Fred Hutch Data Science Lab13
- James Johnson13
- Katherine Do13
- Personalized Health Informatics Group13
- Wolfgang Maier13
- Andrew Mason12
- Anup Kumar12
- Celia van Gelder12
- Jenny Drnevich @jenny12
- Korbinian Bösl12
- Marius van den Beek12
- Melanie Föll12
- Patricia Palagi12
- Simon Andrews12
- Simon Bray12
- Allegra Via11
- Eija Korpelainen11
- Geert van Geest11
- Khaled Jum'ah11
- Mathieu Bourgey11
- Pavankumar Videm11
- Sundeep Agarwal11
- Various11
- Canadian Bioinformatics Workshops10
- Daniel Blankenberg10
- Federico Bianchini10
- Martin Čech10
- Paul Yorke10
- Anika Erxleben9
- Avans Hogeschool9
- David Wishart9
- ELIXIR Estonia9
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- Lucille Delisle9
- MolSSI Education9
- Praveen Kumar9
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- rstudio::conf(2022)9
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- Saskia Hiltemann600
- Helena Rasche504
- Björn Grüning434
- Bérénice Batut263
- Nicola Soranzo180
- Martin Čech130
- Anthony Bretaudeau107
- Cristóbal Gallardo104
- Niall Beard90
- Toby Hodges83
- Wendi Bacon78
- Nate Coraor71
- François Michonneau69
- Armin Dadras66
- Pavankumar Videm65
- Erin Becker63
- Gildas Le Corguillé63
- Marius van den Beek62
- William Durand59
- Zhian N. Kamvar59
- Mine Cetinkaya-Rundel56
- Robert Andrews55
- Simon Gladman55
- Katrin Leinweber54
- Raniere Silva54
- Tracy Teal53
- W. Trevor King52
- Andy Boughton51
- maneesha51
- Beatriz Serrano-Solano49
- Katie Anne Mills48
- Maxim Belkin48
- Teresa Müller48
- Lucille Delisle46
- Mehmet Tekman46
- Yvan Le Bras46
- David Pérez-Suárez44
- Gabriel A. Devenyi44
- Canadian Bioinformatics Workshops43
- Munazah Andrabi43
- Abby Cabunoc Mayes42
- EvanWill42
- Ian Lee42
- Jon Pipitone42
- Jonah Duckles42
- Michael Hansen42
- Piotr Banaszkiewicz42
- Brandon Curtis41
- David Mawdsley41
- Greg Wilson41
- Jemma Stachelek41
- Remi Rampin41
- Allen Lee40
- Andrew Sanchez40
- Michael R. Crusoe40
- Jeff Oliver39
- Joel Nothman39
- Nick Young39
- naught10139
- James Allen38
- Rémi Emonet38
- William L. Close38
- Marie Josse37
- Rayna M Harris37
- Wolfgang Maier36
- Melanie Föll35
- Sarah Brown35
- Anup Kumar34
- Gerard Capes34
- Maria Doyle33
- Renato Alves31
- trk31
- Ana Conrado29
- K.E. Koziar29
- Stephan Druskat29
- Christina K.28
- Simon Bray28
- Subina Mehta28
- Alex Whan27
- Anne Fouilloux26
- Paula Andrea Martinez26
- Michael Joseph25
- Anthony Gitter24
- Geert van Geest24
- João Rodrigues24
- Peter van Heusden24
- Donny Vrins23
- Robert Davey22
- Sarah Stevens22
- Julia Jakiela21
- Tristan Reynolds21
- Wolmar Nyberg Åkerström21
- actions-user21
- Henry Schreiner20
- Hilmar Lapp20
- Leonid Kostrykin20
- Bazante Sanders19
- The Gulbenkian Training Programme in Bioinformatics19
- Anton Nekrutenko18
- Elin Kronander18
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- video183
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- Slides62
- lessons59
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- tutorial53
- hands-on tutorial39
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- Slidedeck32
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- course materials31
- exercise27
- service23
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- PDF14
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- git12
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- tool9
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- FREE online course6
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- examples4
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- software3
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- Related resource
- Associated Training Datasets334
- Associated Workflows310
- Jupyter Notebook (with Solutions)54
- Jupyter Notebook (without Solutions)54
- Input datasets34
- Research Data Management in Life Sciences11
- Slides10
- Associated slides9
- The Carpentries7
- 2nd PaN EOSC Symposium6
- Development in Galaxy slides6
- Quarto/RMarkdown Notebook6
- Proteomics dataset5
- Sequence analysis dataset5
- Transcriptomics dataset5
- Assembly dataset4
- Variant Analysis dataset4
- Assembly slides3
- Associated deliverable on the ExPaNDS ontologies3
- DMPonline3
- Data Stewardship Wizard3
- MAX IV youtube channel3
- Part 33
- Part 43
- Workshop recording3
- ChIP-Seq data analysis dataset2
- DisProt2
- Epigenetics dataset2
- Galaxy Server administration slides2
- Genome Annotation dataset2
- McStas2
- Metagenomics dataset2
- OpenCloning2
- Part 22
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