Training materials
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ELIXIR TeSS
RNA-seq module Frederik Coppens
RNA-Seq RNA-Seq Alignment BAM FASTQ Feature-summarisation Pre-processing QC
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ELIXIR TeSS
Day 2 - RNA-Seq Analysis
Alignment BAM FASTA FASTQ QC Exploratory-analysis Feature-summarisation Pre-processing
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ELIXIR TeSS
ChIP-seq analysis using R
ChIP-Seq Experimental-design QC Data-format Alignment Peak-calling Differential-binding Visualisation Annotation
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ELIXIR TeSS
Alignment
RNA-Seq BAM Populus-tremula RNA-Seq QC Alignment
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ELIXIR TeSS
Annotation
RNA-Seq GFF3 Populus-tremula RNA-Seq Annotation
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ELIXIR TeSS
Lecture slides for the course RNA-seq data analysis with Chipster
FASTQ QC Pre-processing Alignment BAM Expression-estimation Feature-summarisation Differential-expression Statistical-model Exploratory-analysis
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ELIXIR TeSS
Introduction to HTS
HTS-introduction
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ELIXIR TeSS
EMBO High Throughput Sequencing Data Analysis, Cambridge, UK, 2014
RNA-Seq FASTQ GFF3 BAM Populus-tremula RNA-Seq Pre-processing QC Alignment Annotation …
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ELIXIR TeSS
NGS introduction to file formats
HTS-introduction FASTQ BAM VCF WIG CRAM GFF3
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ELIXIR TeSS
Exploratory analysis and downstream analysis
Statistical-model Exploratory-analysis